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Liczba wyników
2015 | 5 | 291--295
Tytuł artykułu

Short Survey: Adaptive Threshold Methods Used to Segment ImmunonegativeCcells from Simulated Images of Follicular Lymphoma Stained with 3,3'-Diaminobenzidine&Haematoxylin

Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
We perform a short survey of image thresholding methods for very specific task, and assess their performance comparison. We analyse performance of adaptive thresholding methods concerning segmentation of immunonegative cells of follicular lymphoma tissue samples stained with 3,3'- Diaminobenzidine&Haematoxylin. We use artificial images based on experimental images that greatly simulates real samples and simplifies process of evaluation. We chose 8 methods of adaptive threshold segmentation, with different approach. They were applied to 6 different monochromatic images derived from original RGB images, by splitting layers, conversion to Lab colour space and colour deconvolution. Evaluation of the results was performed with basic statistical measures as sensitivity and specificity along with Jaccard's coefficient. We identify the thresholding algorithms with superior performance. Collected results will be used to design the new better method based on this approach. (original abstract)
Słowa kluczowe
Rocznik
Tom
5
Strony
291--295
Opis fizyczny
Twórcy
  • Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw
  • Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw
  • Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw
Bibliografia
  • S. Swerdlow, I. A. for Research on Cancer, and W. H. Organization, WHO classification of tumours of haematopoietic and lymphoid tissues, ser. World Health Organization classification of tumours. International Agency for Research on Cancer, 2008, iSBN-13: 9789283224310; ISBN-10: 9283224310.
  • D. Sandeep S., G. Wright, B. Tan, A. Rosenwald, R. D. Gascoyne, W. C. Chan, R. I. Fisher, R. M. Braziel, L. M. Rimsza, T. M. Grogan, T. P. Miller, M. LeBlanc, T. C. Greiner, D. D. Weisenburger, J. C. Lynch, J. Vose, J. O. Armitage, E. B. Smeland, S. Kvaloy, H. Holte, J. Delabie, J. M. Connors, P. M. Lansdorp, Q. Ouyang, T. A. Lister, A. J. Davies, A. J. Norton, H. K. Muller-Hermelink, G. Ott, E. Campo, E. Montserrat, W. H. Wilson, E. S. Jaffe, R. Simon, L. Yang, J. Powell, H. Zhao, N. Goldschmidt, M. Chiorazzi, and L. M. Staudt, "Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells," New England Journal of Medicine, vol. 351, no. 21, pp. 2159-2169, 2004. doi: 10.1056/NEJMoa041869 PMID: 15548776.
  • T. Seidal, A. J. Balaton, and H. Battifora, "Interpretation and quantifi- cation of immunostains," The American Journal of Surgical Pathology, vol. 25, no. 9, pp. 1204-1207, 2001. doi: 10.1097/00000478-200109000- 00013
  • G. Bueno, R. Gonzalez, O. Deniz, M. Garcia-Rojo, J. Gonzalez-Garcia, M. Fernandez-Carrobles, N. Vallez, and J. Salido, "A parallel solution for high resolution histological image analysis," Computer Methods and Programs in Biomedicine, vol. 108, no. 1, pp. 388 - 401, 2012. doi: 10.1016/j.cmpb.2012.03.007
  • K. Kayser, D. Radziszowski, P. Bzdyl, R. Sommer, and G. Kayser, "Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the internet," Diagnostic Pathology, vol. 1, pp. 1-8, 2006. doi: 10.1186/1746-1596-1-10
  • C. Lopez, M. Lejeune, M. T. Salvado, P. Escriva, R. Bosch, L. Pons, T. Alvaro, J. Roig, X. Cugat, J. Baucells, and J. Jaen, "Automated quantification of nuclear immunohistochemical markers with different complexity," Histochemistry and Cell Biology, vol. 129, pp. 379-387, 2008. doi: 10.1007/s00418-007-0368-5
  • C. Lopez, M. Lejeune, R. Bosch, A. Korzynska, M. Garcia-Rojo, M.- T. Salvado, T. Alvaro, C. Callau, A. Roso, and J. Jaen, "Digital image analysis in breast cancer: an example of an automated methodology and the effects of image compression." Studies in health technology and informatics, vol. 179, pp. 155-171, 2011. doi: 10.3233/978-1-61499- 086-4-155
  • M. Apro, D. Novakovic, S. Pal, S. Dedijer, and N. Milic, "Colour space selection for entropy-based image segmentation of folded substrate images," Acta Polytechnica Hungarica, vol. 10, no. 1, pp. 43-62, 2013. doi: 10.12700/aph.10.01.2013.1.3. ISSN: 1785-8860.
  • A. Ruifrok and D. Johnston, "Quantification of histochemical staining by color deconvolution." Analytical and quantitative cytology and histology, vol. 23, no. 4, pp. 291-299, Aug 2001. [Online]. Available: http://europepmc.org/abstract/MED/11531144
  • A. Korzynska, L. Roszkowiak, C. Lopez, R. Bosch, L. Witkowski, and M. Lejeune, "Validation of various adaptive threshold methods of segmentation applied to follicular lymphoma digital images stained with 3,3'-diaminobenzidine&haematoxylin," Diagnostic Pathology, vol. 8, no. 1, p. 48, 2013. doi: 10.1186/1746-1596-8-48
  • A. Lehmussola, P. Ruusuvuori, J. Selinummi, H. Huttunen, and O. Yli-Harja, "Computational framework for simulating fluorescence microscope images with cell populations," Medical Imaging, IEEE Transactions on, vol. 26, no. 7, pp. 1010 -1016, july 2007. doi: 10.1109/TMI.2007.896925
  • A. Lehmussola, P. Ruusuvuori, J. Selinummi, T. Rajala, and O. YliHarja, "Synthetic images of high-throughput microscopy for validation of image analysis methods," Proceedings of the IEEE, vol. 96, no. 8, pp. 1348 -1360, aug. 2008. doi: 10.1109/JPROC.2008.925490
  • M. Sezgin and B. Sankur, "Survey over image thresholding techniques and quantitative performance evaluation," Journal of Electronic Imaging, vol. 13, no. 1, pp. 146-168, 2004. doi: 10.1117/1.1631315
  • W. Niblack, An introduction to image processing. Englewood Cliffs, NJ: Prentice-Hall International, 1986.
  • J. Sauvola and M. Pietikainen, "Adaptive document image binarization," Pattern Recognition, vol. 33, no. 2, pp. 225 - 236, 2000. doi: 10.1016/S0031-3203(99)00055-2
  • J. Bernsen, "Dynamic thresholding of gray-level images," in ICPR'86: International Conference on Pattern Recognition, 1986.
  • J. M. White and G. D. Rohrer, "Image thresholding for optical character recognition and other applications requiring character image extraction," IBM Journal of Research and Development, vol. 27, no. 4, pp. 400 -411, july 1983. doi: 10.1147/rd.274.0400
  • P. W. Palumbo, P. Swaminathan, and S. N. Srihari, "Document image binarization: Evaluation of algorithms," Proc. SPIE, Applications of Digital Image Processing IX, vol. 697, no. 278, pp. 278-285, December 1986. doi: 10.1117/12.976229
  • Y. Yasuda, M. Dubois, and T. Huang, "Data compression for check processing machines," Proceedings of the IEEE, vol. 68, no. 7, pp. 874 - 885, july 1980. doi: 10.1109/PROC.1980.11753
  • U. Neuman, A. Korzynska, C. Lopez, M. Lejeune, L. Roszkowiak, and R. Bosch, "Equalisation of archival microscopic images from immunohistochemically stained tissue sections," Biocybernetics and Biomedical Engineering, vol. 33, no. 1, pp. 63-76, 2013. doi: 10.1016/S0208-5216(13)70056-1
Typ dokumentu
Bibliografia
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Identyfikator YADDA
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